:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'amos' .. highlight: bash amos ==== .. conda:recipe:: amos :replaces_section_title: :noindex: A Modular\, Open\-Source whole genome assembler :homepage: http://amos.sourceforge.net/wiki/index.php/AMOS :license: Artistic License :recipe: /`amos `_/`meta.yaml `_ :links: biotools: :biotools:`amos` .. conda:package:: amos |downloads_amos| |docker_amos| :versions: ``3.1.0-3`` :depends jellyfish: :depends mummer: :depends perl-dbi: :depends perl-statistics-descriptive: :depends perl-threaded: :depends perl-xml-parser: :depends python: ``2.7*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install amos and update with:: mamba update amos To create a new environment, run:: mamba create --name myenvname amos with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/amos: (see `amos/tags`_ for valid values for ````) .. |downloads_amos| image:: https://img.shields.io/conda/dn/bioconda/amos.svg?style=flat :target: https://anaconda.org/bioconda/amos :alt: (downloads) .. |docker_amos| image:: https://quay.io/repository/biocontainers/amos/status :target: https://quay.io/repository/biocontainers/amos .. _`amos/tags`: https://quay.io/repository/biocontainers/amos?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/amos/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/amos/README.html