:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'anglerfish' .. highlight: bash anglerfish ========== .. conda:recipe:: anglerfish :replaces_section_title: :noindex: Anglerfish\, a tool to demultiplex Illumina libraries from ONT data :homepage: https://github.com/remiolsen/anglerfish :license: MIT / MIT :recipe: /`anglerfish `_/`meta.yaml `_ .. conda:package:: anglerfish |downloads_anglerfish| |docker_anglerfish| :versions: ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.0-0``,  ``0.4.2-1``,  ``0.4.2-0``,  ``0.4.1-0`` :depends biopython: :depends click: :depends minimap2: :depends numpy: :depends pandas: :depends python: ``>=3.7`` :depends python-levenshtein: :depends pyyaml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install anglerfish and update with:: mamba update anglerfish To create a new environment, run:: mamba create --name myenvname anglerfish with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/anglerfish: (see `anglerfish/tags`_ for valid values for ````) .. |downloads_anglerfish| image:: https://img.shields.io/conda/dn/bioconda/anglerfish.svg?style=flat :target: https://anaconda.org/bioconda/anglerfish :alt: (downloads) .. |docker_anglerfish| image:: https://quay.io/repository/biocontainers/anglerfish/status :target: https://quay.io/repository/biocontainers/anglerfish .. _`anglerfish/tags`: https://quay.io/repository/biocontainers/anglerfish?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/anglerfish/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/anglerfish/README.html