:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'anvio-minimal' .. highlight: bash anvio-minimal ============= .. conda:recipe:: anvio-minimal :replaces_section_title: :noindex: An interactive analysis and visualization platform for omics data :homepage: https://merenlab.org/software/anvio/ :documentation: https://anvio.org/learn/ :developer docs: https://github.com/merenlab/anvio :license: GPL3 / GPL-3.0-or-later :recipe: /`anvio-minimal `_/`meta.yaml `_ :links: biotools: :biotools:`anvio`, doi: :doi:`10.1038/s41564-020-00834-3` .. conda:package:: anvio-minimal |downloads_anvio-minimal| |docker_anvio-minimal| :versions: .. raw:: html
8-07.1-07-06.2-16.2-06.1-16.1-06-05.5.0-0 ``8-0``,  ``7.1-0``,  ``7-0``,  ``6.2-1``,  ``6.2-0``,  ``6.1-1``,  ``6.1-0``,  ``6-0``,  ``5.5.0-0``,  ``5.4.0-0``,  ``5.3.0-0``,  ``5.2.0-1``,  ``5.2.0-0`` .. raw:: html
:depends bottle: :depends colored: :depends django: :depends ete3: :depends illumina-utils: :depends matplotlib-base: :depends mistune: :depends multiprocess: :depends networkx: :depends numba: :depends numpy: ``<=1.24`` :depends pandas: ``1.4.4`` :depends paste: :depends plotext: :depends psutil: :depends pyani: ``0.2.10`` :depends pysam: :depends python: ``>=3`` :depends requests: :depends rich-argparse: :depends scikit-learn: ``1.2.2`` :depends scipy: :depends six: :depends snakemake-minimal: ``5.10.0`` :depends sqlite: ``>=3.31.1`` :depends statsmodels: :depends tabulate: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install anvio-minimal and update with:: mamba update anvio-minimal To create a new environment, run:: mamba create --name myenvname anvio-minimal with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/anvio-minimal: (see `anvio-minimal/tags`_ for valid values for ````) .. |downloads_anvio-minimal| image:: https://img.shields.io/conda/dn/bioconda/anvio-minimal.svg?style=flat :target: https://anaconda.org/bioconda/anvio-minimal :alt: (downloads) .. |docker_anvio-minimal| image:: https://quay.io/repository/biocontainers/anvio-minimal/status :target: https://quay.io/repository/biocontainers/anvio-minimal .. _`anvio-minimal/tags`: https://quay.io/repository/biocontainers/anvio-minimal?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/anvio-minimal/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/anvio-minimal/README.html