:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'any2fasta' .. highlight: bash any2fasta ========= .. conda:recipe:: any2fasta :replaces_section_title: :noindex: Convert various sequence formats to FASTA :homepage: https://github.com/tseemann/any2fasta :license: GPL-3.0 :recipe: /`any2fasta `_/`meta.yaml `_ .. conda:package:: any2fasta |downloads_any2fasta| |docker_any2fasta| :versions: ``0.4.2-3``,  ``0.4.2-2``,  ``0.4.2-1`` :depends perl: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install any2fasta and update with:: mamba update any2fasta To create a new environment, run:: mamba create --name myenvname any2fasta with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/any2fasta: (see `any2fasta/tags`_ for valid values for ````) .. |downloads_any2fasta| image:: https://img.shields.io/conda/dn/bioconda/any2fasta.svg?style=flat :target: https://anaconda.org/bioconda/any2fasta :alt: (downloads) .. |docker_any2fasta| image:: https://quay.io/repository/biocontainers/any2fasta/status :target: https://quay.io/repository/biocontainers/any2fasta .. _`any2fasta/tags`: https://quay.io/repository/biocontainers/any2fasta?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/any2fasta/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/any2fasta/README.html