:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'aptardi' .. highlight: bash aptardi ======= .. conda:recipe:: aptardi :replaces_section_title: :noindex: aptardi is a tool that predicts polyA sites from RNA\-Seq data and DNA sequence :homepage: https://github.com/luskry/aptardi :license: MIT :recipe: /`aptardi `_/`meta.yaml `_ .. conda:package:: aptardi |downloads_aptardi| |docker_aptardi| :versions: ``1.4-0`` :depends h5py: ``<=2.10.0`` :depends numpy: ``<=1.19.5`` :depends pandas: ``>=1.0.3`` :depends python: ``>=3.7,<3.8`` :depends scikit-learn: ``>=0.24`` :depends tensorflow: ``2.0.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install aptardi and update with:: mamba update aptardi To create a new environment, run:: mamba create --name myenvname aptardi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/aptardi: (see `aptardi/tags`_ for valid values for ````) .. |downloads_aptardi| image:: https://img.shields.io/conda/dn/bioconda/aptardi.svg?style=flat :target: https://anaconda.org/bioconda/aptardi :alt: (downloads) .. |docker_aptardi| image:: https://quay.io/repository/biocontainers/aptardi/status :target: https://quay.io/repository/biocontainers/aptardi .. _`aptardi/tags`: https://quay.io/repository/biocontainers/aptardi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/aptardi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/aptardi/README.html