:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'arvados-cwl-runner' .. highlight: bash arvados-cwl-runner ================== .. conda:recipe:: arvados-cwl-runner :replaces_section_title: :noindex: Arvados Common Workflow Language runner :homepage: https://github.com/curoverse/arvados/tree/master/sdk/cwl :license: Apache 2.0 :recipe: /`arvados-cwl-runner `_/`meta.yaml `_ .. conda:package:: arvados-cwl-runner |downloads_arvados-cwl-runner| |docker_arvados-cwl-runner| :versions: .. raw:: html
2.7.0-02.6.3-02.0.4-02.0.3.1-12.0.3.1-02.0.3-02.0.2-02.0.1-02.0.0-0 ``2.7.0-0``,  ``2.6.3-0``,  ``2.0.4-0``,  ``2.0.3.1-1``,  ``2.0.3.1-0``,  ``2.0.3-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.4.3-0``,  ``1.4.2-0``,  ``1.4.1-0``,  ``1.4.0-0``,  ``1.3.3.20190419203205-0``,  ``1.3.2.20190419203205-0``,  ``1.3.1.20190419203205-0``,  ``1.3.1.20190301150258-0``,  ``1.3.0.20190221150417-0``,  ``1.3.0.20190206223817-0``,  ``1.3.0.20181218191458-0``,  ``1.0.20180216164101-1``,  ``1.0.20180216164101-0``,  ``1.0.20171211211613-0``,  ``1.0.20171010180436-1``,  ``1.0.20171010180436-0``,  ``1.0.20170914161842-0``,  ``1.0.20170414202629-0``,  ``1.0.20170327202303-0``,  ``1.0.20170216151734-0``,  ``1.0.20161230191227-0``,  ``1.0.20161123235904-0``,  ``1.0.20161031135838-0``,  ``1.0.20160715171107-0``,  ``1.0.20160502202716-0``,  ``1.0.20160421150319-0``,  ``1.0.20160411202258-0``,  ``1.0.20160406195023-0``,  ``1.0.20160401183214-0``,  ``1.0.20160318143738-0``,  ``1.0.20160314171956-0``,  ``1.0.20160311144647-0``,  ``1.0.20160323-0`` .. raw:: html
:depends arvados-python-client: ``>=2.6`` :depends cwltool: ``>=3.1`` :depends python: :depends ruamel.yaml: ``>=0.15.54`` :depends schema-salad: ``>=3.0.20181129082112`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install arvados-cwl-runner and update with:: mamba update arvados-cwl-runner To create a new environment, run:: mamba create --name myenvname arvados-cwl-runner with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/arvados-cwl-runner: (see `arvados-cwl-runner/tags`_ for valid values for ````) .. |downloads_arvados-cwl-runner| image:: https://img.shields.io/conda/dn/bioconda/arvados-cwl-runner.svg?style=flat :target: https://anaconda.org/bioconda/arvados-cwl-runner :alt: (downloads) .. |docker_arvados-cwl-runner| image:: https://quay.io/repository/biocontainers/arvados-cwl-runner/status :target: https://quay.io/repository/biocontainers/arvados-cwl-runner .. _`arvados-cwl-runner/tags`: https://quay.io/repository/biocontainers/arvados-cwl-runner?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/arvados-cwl-runner/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/arvados-cwl-runner/README.html