:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'auspice' .. highlight: bash auspice ======= .. conda:recipe:: auspice :replaces_section_title: :noindex: Auspice is an open\-source interactive tool for visualising phylogenomic data :homepage: https://docs.nextstrain.org/projects/auspice/ :developer docs: https://github.com/nextstrain/auspice :license: AGPL / AGPL-3.0 :recipe: /`auspice `_/`meta.yaml `_ .. conda:package:: auspice |downloads_auspice| |docker_auspice| :versions: .. raw:: html
2.52.0-02.50.0-02.49.0-02.48.0-02.47.0-02.46.0-22.46.0-02.45.1-22.45.1-1 ``2.52.0-0``,  ``2.50.0-0``,  ``2.49.0-0``,  ``2.48.0-0``,  ``2.47.0-0``,  ``2.46.0-2``,  ``2.46.0-0``,  ``2.45.1-2``,  ``2.45.1-1``,  ``2.45.1-0``,  ``2.45.0-0``,  ``2.44.0-0``,  ``2.43.0-0``,  ``2.42.0-0``,  ``2.40.1-0``,  ``2.40.0-0``,  ``2.39.0-1``,  ``2.39.0-0``,  ``2.38.0-1``,  ``2.38.0-0``,  ``2.37.3-1``,  ``2.37.3-0``,  ``2.37.1-1``,  ``2.37.1-0``,  ``2.29.1-1``,  ``2.29.1-0``,  ``2.23.0-1``,  ``2.23.0-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends nodejs: ``16.*|18.*|20.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install auspice and update with:: mamba update auspice To create a new environment, run:: mamba create --name myenvname auspice with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/auspice: (see `auspice/tags`_ for valid values for ````) .. |downloads_auspice| image:: https://img.shields.io/conda/dn/bioconda/auspice.svg?style=flat :target: https://anaconda.org/bioconda/auspice :alt: (downloads) .. |docker_auspice| image:: https://quay.io/repository/biocontainers/auspice/status :target: https://quay.io/repository/biocontainers/auspice .. _`auspice/tags`: https://quay.io/repository/biocontainers/auspice?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/auspice/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/auspice/README.html