:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bakta' .. highlight: bash bakta ===== .. conda:recipe:: bakta :replaces_section_title: :noindex: Rapid \& standardized annotation of bacterial genomes\, MAGs \& plasmids. :homepage: https://github.com/oschwengers/bakta :license: GPL / GPLv3 :recipe: /`bakta `_/`meta.yaml `_ :links: biotools: :biotools:`bakta`, doi: :doi:`10.1099/mgen.0.000685`, doi: :doi:`10.5281/zenodo.4247252` .. conda:package:: bakta |downloads_bakta| |docker_bakta| :versions: .. raw:: html
1.4.2-01.4.1-01.4.0-11.4.0-01.3.3-01.3.1-01.3.0-01.2.4-11.2.4-0 ``1.4.2-0``,  ``1.4.1-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.3.3-0``,  ``1.3.1-0``,  ``1.3.0-0``,  ``1.2.4-1``,  ``1.2.4-0``,  ``1.2.3-0``,  ``1.2.2-0``,  ``1.2.1-0``,  ``1.2.0-0``,  ``1.1.1-0``,  ``1.1-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0-0``,  ``0.5-0``,  ``0.4-0``,  ``0.3.2-0``,  ``0.3.1-0``,  ``0.3-0`` .. raw:: html
:depends alive-progress: ``1.6.2`` :depends aragorn: ``>=1.2.38`` :depends biopython: ``>=1.78`` :depends blast: ``>=2.12.0`` :depends diamond: ``>=2.0.14`` :depends hmmer: ``>=3.3.2`` :depends infernal: ``>=1.1.4`` :depends ncbi-amrfinderplus: ``>=3.10.23`` :depends piler-cr: :depends prodigal: ``>=2.6.3`` :depends python: ``>=3.8`` :depends requests: ``>=2.25.1`` :depends trnascan-se: ``>=2.0.8`` :depends xopen: ``>=1.1.0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bakta and update with:: conda update bakta or use the docker container:: docker pull quay.io/biocontainers/bakta: (see `bakta/tags`_ for valid values for ````) .. |downloads_bakta| image:: https://img.shields.io/conda/dn/bioconda/bakta.svg?style=flat :target: https://anaconda.org/bioconda/bakta :alt: (downloads) .. |docker_bakta| image:: https://quay.io/repository/biocontainers/bakta/status :target: https://quay.io/repository/biocontainers/bakta .. _`bakta/tags`: https://quay.io/repository/biocontainers/bakta?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bakta/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bakta/README.html