:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'barrnap-python' .. highlight: bash barrnap-python ============== .. conda:recipe:: barrnap-python :replaces_section_title: :noindex: python package for Torsten Seemann\'s barrnap package for annotating rRNAs :homepage: https://github.com/nickp60/barrnap-python :license: GPL3 / GNU General Public License v3.0 :recipe: /`barrnap-python `_/`meta.yaml `_ Original Perl code can be found at the projects homepage here\: https\:\/\/github.com\/tseemann\/barrnap .. conda:package:: barrnap-python |downloads_barrnap-python| |docker_barrnap-python| :versions: ``0.0.5-2``,  ``0.0.5-1``,  ``0.0.5-0`` :depends barrnap: ``>=0.8`` :depends python: ``>=3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install barrnap-python and update with:: mamba update barrnap-python To create a new environment, run:: mamba create --name myenvname barrnap-python with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/barrnap-python: (see `barrnap-python/tags`_ for valid values for ````) .. |downloads_barrnap-python| image:: https://img.shields.io/conda/dn/bioconda/barrnap-python.svg?style=flat :target: https://anaconda.org/bioconda/barrnap-python :alt: (downloads) .. |docker_barrnap-python| image:: https://quay.io/repository/biocontainers/barrnap-python/status :target: https://quay.io/repository/biocontainers/barrnap-python .. _`barrnap-python/tags`: https://quay.io/repository/biocontainers/barrnap-python?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/barrnap-python/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/barrnap-python/README.html