:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bcbio-prioritize' .. highlight: bash bcbio-prioritize ================ .. conda:recipe:: bcbio-prioritize :replaces_section_title: :noindex: Prioritize small variants\, structural variants and coverage based on biological inputs :homepage: https://github.com/chapmanb/bcbio.prioritize :license: MIT :recipe: /`bcbio-prioritize `_/`meta.yaml `_ .. conda:package:: bcbio-prioritize |downloads_bcbio-prioritize| |docker_bcbio-prioritize| :versions: .. raw:: html
0.0.8-30.0.8-20.0.8-10.0.8-00.0.7-00.0.6-10.0.5-10.0.5-00.0.4-0 ``0.0.8-3``,  ``0.0.8-2``,  ``0.0.8-1``,  ``0.0.8-0``,  ``0.0.7-0``,  ``0.0.6-1``,  ``0.0.5-1``,  ``0.0.5-0``,  ``0.0.4-0``,  ``0.0.2-0`` .. raw:: html
:depends openjdk: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bcbio-prioritize and update with:: mamba update bcbio-prioritize To create a new environment, run:: mamba create --name myenvname bcbio-prioritize with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bcbio-prioritize: (see `bcbio-prioritize/tags`_ for valid values for ````) .. |downloads_bcbio-prioritize| image:: https://img.shields.io/conda/dn/bioconda/bcbio-prioritize.svg?style=flat :target: https://anaconda.org/bioconda/bcbio-prioritize :alt: (downloads) .. |docker_bcbio-prioritize| image:: https://quay.io/repository/biocontainers/bcbio-prioritize/status :target: https://quay.io/repository/biocontainers/bcbio-prioritize .. _`bcbio-prioritize/tags`: https://quay.io/repository/biocontainers/bcbio-prioritize?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bcbio-prioritize/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bcbio-prioritize/README.html