:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'beast' .. highlight: bash beast ===== .. conda:recipe:: beast :replaces_section_title: :noindex: BEAST is a cross\-platform program for Bayesian analysis of molecular sequences using MCMC :homepage: http://beast.bio.ed.ac.uk :developer docs: https://github.com/beast-dev/beast-mcmc :license: GPL / LGPL-2.1 :recipe: /`beast `_/`meta.yaml `_ :links: biotools: :biotools:`beast`, doi: :doi:`10.1093/molbev/mss075` .. conda:package:: beast |downloads_beast| |docker_beast| :versions: .. raw:: html
1.10.4-21.10.4-11.10.4-01.10.3-01.10.2-01.10.1-01.10.0-21.10.0-01.8.4-0 ``1.10.4-2``,  ``1.10.4-1``,  ``1.10.4-0``,  ``1.10.3-0``,  ``1.10.2-0``,  ``1.10.1-0``,  ``1.10.0-2``,  ``1.10.0-0``,  ``1.8.4-0``,  ``1.8.2-1`` .. raw:: html
:depends beagle-lib: :depends openjdk: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install beast and update with:: mamba update beast To create a new environment, run:: mamba create --name myenvname beast with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/beast: (see `beast/tags`_ for valid values for ````) .. |downloads_beast| image:: https://img.shields.io/conda/dn/bioconda/beast.svg?style=flat :target: https://anaconda.org/bioconda/beast :alt: (downloads) .. |docker_beast| image:: https://quay.io/repository/biocontainers/beast/status :target: https://quay.io/repository/biocontainers/beast .. _`beast/tags`: https://quay.io/repository/biocontainers/beast?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/beast/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/beast/README.html