:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'binsanity' .. highlight: bash binsanity ========= .. conda:recipe:: binsanity :replaces_section_title: :noindex: Method to cluster contigs based a biphasic method with coverage and composition :homepage: https://github.com/edgraham/BinSanity :license: GPL3 / GPL3 :recipe: /`binsanity `_/`meta.yaml `_ .. conda:package:: binsanity |downloads_binsanity| |docker_binsanity| :versions: .. raw:: html
0.5.4-00.5.3-00.4.4-10.4.4-00.4.2-00.4.1-00.3.8-00.3.6-00.3.4-0 ``0.5.4-0``,  ``0.5.3-0``,  ``0.4.4-1``,  ``0.4.4-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.3.8-0``,  ``0.3.6-0``,  ``0.3.4-0``,  ``0.3.1-0``,  ``0.2.9.5-0``,  ``0.2.9.4-0``,  ``0.2.9.2-0``,  ``0.2.9.1-0``,  ``0.2.9-0``,  ``0.2.8.2-0``,  ``0.2.7.1-0``,  ``0.2.6.3-0``,  ``0.2.6.1-2``,  ``0.2.6.1-1``,  ``0.2.6.1-0`` .. raw:: html
:depends biopython: :depends checkm-genome: :depends pandas: ``>=0.13.0`` :depends python: :depends scikit-learn: ``>=0.23`` :depends scipy: ``>=0.13.0`` :depends subread: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install binsanity and update with:: mamba update binsanity To create a new environment, run:: mamba create --name myenvname binsanity with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/binsanity: (see `binsanity/tags`_ for valid values for ````) .. |downloads_binsanity| image:: https://img.shields.io/conda/dn/bioconda/binsanity.svg?style=flat :target: https://anaconda.org/bioconda/binsanity :alt: (downloads) .. |docker_binsanity| image:: https://quay.io/repository/biocontainers/binsanity/status :target: https://quay.io/repository/biocontainers/binsanity .. _`binsanity/tags`: https://quay.io/repository/biocontainers/binsanity?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/binsanity/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/binsanity/README.html