:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bio-vcf' .. highlight: bash bio-vcf ======= .. conda:recipe:: bio-vcf :replaces_section_title: :noindex: Smart VCF parser :homepage: https://github.com/vcflib/bio-vcf :license: MIT :recipe: /`bio-vcf `_/`meta.yaml `_ .. conda:package:: bio-vcf |downloads_bio-vcf| |docker_bio-vcf| :versions: ``0.9.5-0``,  ``0.9.2-0``,  ``0.9.1-2``,  ``0.9.1-1``,  ``0.9.1-0``,  ``0.9.0-0`` :depends ruby: ``2.6.6.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bio-vcf and update with:: mamba update bio-vcf To create a new environment, run:: mamba create --name myenvname bio-vcf with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bio-vcf: (see `bio-vcf/tags`_ for valid values for ````) .. |downloads_bio-vcf| image:: https://img.shields.io/conda/dn/bioconda/bio-vcf.svg?style=flat :target: https://anaconda.org/bioconda/bio-vcf :alt: (downloads) .. |docker_bio-vcf| image:: https://quay.io/repository/biocontainers/bio-vcf/status :target: https://quay.io/repository/biocontainers/bio-vcf .. _`bio-vcf/tags`: https://quay.io/repository/biocontainers/bio-vcf?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bio-vcf/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bio-vcf/README.html