:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-abarray' .. highlight: bash bioconductor-abarray ==================== .. conda:recipe:: bioconductor-abarray :replaces_section_title: :noindex: Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray \(AB1700\) gene expression data. :homepage: https://bioconductor.org/packages/3.14/bioc/html/ABarray.html :license: GPL :recipe: /`bioconductor-abarray `_/`meta.yaml `_ Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray \(AB1700\) data format. Functions include data preprocessing\, filtering\, control probe analysis\, statistical analysis in one single function. A GUI interface is also provided. The raw data\, processed data\, graphics output and statistical results are organized into folders according to the analysis settings used. .. conda:package:: bioconductor-abarray |downloads_bioconductor-abarray| |docker_bioconductor-abarray| :versions: ``1.62.0-0``,  ``1.60.0-0``,  ``1.58.0-1``,  ``1.58.0-0``,  ``1.56.0-0``,  ``1.54.0-0``,  ``1.52.0-1``,  ``1.50.0-0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-multtest: ``>=2.50.0,<2.51.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-abarray and update with:: conda update bioconductor-abarray or use the docker container:: docker pull quay.io/biocontainers/bioconductor-abarray: (see `bioconductor-abarray/tags`_ for valid values for ````) .. |downloads_bioconductor-abarray| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-abarray.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-abarray :alt: (downloads) .. |docker_bioconductor-abarray| image:: https://quay.io/repository/biocontainers/bioconductor-abarray/status :target: https://quay.io/repository/biocontainers/bioconductor-abarray .. _`bioconductor-abarray/tags`: https://quay.io/repository/biocontainers/bioconductor-abarray?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-abarray/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-abarray/README.html