:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-acgh'
.. highlight: bash

bioconductor-acgh
=================

.. conda:recipe:: bioconductor-acgh
   :replaces_section_title:
   :noindex:

   Classes and functions for Array Comparative Genomic Hybridization data

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/aCGH.html
   :license: GPL-2
   :recipe: /`bioconductor-acgh <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-acgh>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-acgh/meta.yaml>`_
   :links: biotools: :biotools:`acgh`, doi: :doi:`10.1093/bioinformatics/bti677`

   Functions for reading aCGH data from image analysis output files and clone information files\, creation of aCGH S3 objects for storing these data. Basic methods for accessing\/replacing\, subsetting\, printing and plotting aCGH objects.


.. conda:package:: bioconductor-acgh

   |downloads_bioconductor-acgh| |docker_bioconductor-acgh|

   :versions:
      
      

      ``1.66.0-0``,  ``1.64.0-0``,  ``1.62.0-1``,  ``1.60.0-0``,  ``1.58.0-0``,  ``1.56.0-0``,  ``1.54.0-0``

      

   
   :depends bioconductor-biobase: ``>=2.48.0,<2.49.0``
   :depends bioconductor-multtest: ``>=2.44.0,<2.45.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=7.3.0``
   :depends liblapack: ``>=3.8.0,<3.9.0a0``
   :depends libstdcxx-ng: ``>=7.3.0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-cluster: 
   :depends r-survival: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-acgh

   and update with::

      conda update bioconductor-acgh

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-acgh:<tag>

   (see `bioconductor-acgh/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-acgh| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-acgh.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-acgh
   :alt:   (downloads)
.. |docker_bioconductor-acgh| image:: https://quay.io/repository/biocontainers/bioconductor-acgh/status
   :target: https://quay.io/repository/biocontainers/bioconductor-acgh
.. _`bioconductor-acgh/tags`: https://quay.io/repository/biocontainers/bioconductor-acgh?tab=tags







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