:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-adacgh2' .. highlight: bash bioconductor-adacgh2 ==================== .. conda:recipe:: bioconductor-adacgh2 :replaces_section_title: :noindex: Analysis of big data from aCGH experiments using parallel computing and ff objects :homepage: https://bioconductor.org/packages/3.14/bioc/html/ADaCGH2.html :license: GPL (>= 3) :recipe: /`bioconductor-adacgh2 `_/`meta.yaml `_ Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation\, wavelet\-based smoothing \(both as in Liu et al.\, and HaarSeg as in Ben\-Yaacov and Eldar\)\, HMM\, BioHMM\, GLAD\, CGHseg. Most computations are parallelized \(either via forking or with clusters\, including MPI and sockets clusters\) and use ff for storing data. .. conda:package:: bioconductor-adacgh2 |downloads_bioconductor-adacgh2| |docker_bioconductor-adacgh2| :versions: ``2.34.0-1``,  ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-1``,  ``2.30.0-0``,  ``2.28.0-0``,  ``2.26.0-0``,  ``2.24.0-1`` :depends bioconductor-acgh: ``>=1.72.0,<1.73.0`` :depends bioconductor-dnacopy: ``>=1.68.0,<1.69.0`` :depends bioconductor-glad: ``>=2.58.0,<2.59.0`` :depends bioconductor-snapcgh: ``>=1.64.0,<1.65.0`` :depends bioconductor-tilingarray: ``>=1.72.0,<1.73.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-bit: :depends r-cluster: :depends r-ff: :depends r-ffbase: :depends r-waveslim: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-adacgh2 and update with:: conda update bioconductor-adacgh2 or use the docker container:: docker pull quay.io/biocontainers/bioconductor-adacgh2: (see `bioconductor-adacgh2/tags`_ for valid values for ````) .. |downloads_bioconductor-adacgh2| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-adacgh2.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-adacgh2 :alt: (downloads) .. |docker_bioconductor-adacgh2| image:: https://quay.io/repository/biocontainers/bioconductor-adacgh2/status :target: https://quay.io/repository/biocontainers/bioconductor-adacgh2 .. _`bioconductor-adacgh2/tags`: https://quay.io/repository/biocontainers/bioconductor-adacgh2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-adacgh2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-adacgh2/README.html