:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-adam' .. highlight: bash bioconductor-adam ================= .. conda:recipe:: bioconductor-adam :replaces_section_title: :noindex: ADAM\: Activity and Diversity Analysis Module :homepage: https://bioconductor.org/packages/3.18/bioc/html/ADAM.html :license: GPL (>= 2) :recipe: /`bioconductor-adam `_/`meta.yaml `_ ADAM is a GSEA R package created to group a set of genes from comparative samples \(control versus experiment\) belonging to different species according to their respective functions \(Gene Ontology and KEGG pathways as default\) and show their significance by calculating p\-values referring togene diversity and activity. Each group of genes is called GFAG \(Group of Functionally Associated Genes\). .. conda:package:: bioconductor-adam |downloads_bioconductor-adam| |docker_bioconductor-adam| :versions: .. raw:: html
1.18.0-01.16.0-01.14.0-11.14.0-01.10.0-21.10.0-11.10.0-01.8.0-01.6.0-1 ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.10.0-2``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1`` .. raw:: html
:depends bioconductor-go.db: ``>=3.18.0,<3.19.0`` :depends bioconductor-go.db: ``>=3.18.0,<3.19.0a0`` :depends bioconductor-keggrest: ``>=1.42.0,<1.43.0`` :depends bioconductor-keggrest: ``>=1.42.0,<1.43.0a0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dplyr: ``>=0.7.6`` :depends r-dt: ``>=0.4`` :depends r-knitr: :depends r-pbapply: ``>=1.3-4`` :depends r-rcpp: ``>=0.12.18`` :depends r-stringr: ``>=1.3.1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-adam and update with:: mamba update bioconductor-adam To create a new environment, run:: mamba create --name myenvname bioconductor-adam with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-adam: (see `bioconductor-adam/tags`_ for valid values for ````) .. |downloads_bioconductor-adam| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-adam.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-adam :alt: (downloads) .. |docker_bioconductor-adam| image:: https://quay.io/repository/biocontainers/bioconductor-adam/status :target: https://quay.io/repository/biocontainers/bioconductor-adam .. _`bioconductor-adam/tags`: https://quay.io/repository/biocontainers/bioconductor-adam?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-adam/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-adam/README.html