:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-aims' .. highlight: bash bioconductor-aims ================= .. conda:recipe:: bioconductor-aims :replaces_section_title: :noindex: AIMS \: Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype :homepage: https://bioconductor.org/packages/3.18/bioc/html/AIMS.html :license: Artistic-2.0 :recipe: /`bioconductor-aims `_/`meta.yaml `_ :links: biotools: :biotools:`aims`, doi: :doi:`10.1093/jnci/dju357` This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes \(Luminal A\, Luminal B\, Her2\-enriched\, Basal\-like\, Normal\-like\). Assignments could be done on individual samples as well as on dataset of gene expression data. .. conda:package:: bioconductor-aims |downloads_bioconductor-aims| |docker_bioconductor-aims| :versions: .. raw:: html
1.34.0-01.32.0-01.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-0 ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.14.1-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-e1071: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-aims and update with:: mamba update bioconductor-aims To create a new environment, run:: mamba create --name myenvname bioconductor-aims with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-aims: (see `bioconductor-aims/tags`_ for valid values for ````) .. |downloads_bioconductor-aims| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-aims.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-aims :alt: (downloads) .. |docker_bioconductor-aims| image:: https://quay.io/repository/biocontainers/bioconductor-aims/status :target: https://quay.io/repository/biocontainers/bioconductor-aims .. _`bioconductor-aims/tags`: https://quay.io/repository/biocontainers/bioconductor-aims?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aims/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-aims/README.html