:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-attract' .. highlight: bash bioconductor-attract ==================== .. conda:recipe:: bioconductor-attract :replaces_section_title: :noindex: Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman\'s Attractor Landscape :homepage: https://bioconductor.org/packages/3.18/bioc/html/attract.html :license: LGPL (>= 2.0) :recipe: /`bioconductor-attract `_/`meta.yaml `_ This package contains the functions to find the gene expression modules that represent the drivers of Kauffman\'s attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups\, which show transcriptionally\-coordinated changes in gene expression. .. conda:package:: bioconductor-attract |downloads_bioconductor-attract| |docker_bioconductor-attract| :versions: .. raw:: html
1.54.0-01.52.0-01.50.0-01.46.0-01.44.0-01.42.0-11.42.0-01.40.0-01.38.0-0 ``1.54.0-0``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-1``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-1``,  ``1.34.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-gostats: ``>=2.68.0,<2.69.0`` :depends bioconductor-keggrest: ``>=1.42.0,<1.43.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-org.hs.eg.db: ``>=3.18.0,<3.19.0`` :depends bioconductor-reactome.db: ``>=1.86.0,<1.87.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cluster: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-attract and update with:: mamba update bioconductor-attract To create a new environment, run:: mamba create --name myenvname bioconductor-attract with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-attract: (see `bioconductor-attract/tags`_ for valid values for ````) .. |downloads_bioconductor-attract| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-attract.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-attract :alt: (downloads) .. |docker_bioconductor-attract| image:: https://quay.io/repository/biocontainers/bioconductor-attract/status :target: https://quay.io/repository/biocontainers/bioconductor-attract .. _`bioconductor-attract/tags`: https://quay.io/repository/biocontainers/bioconductor-attract?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-attract/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-attract/README.html