:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-autonomics'
.. highlight: bash

bioconductor-autonomics
=======================

.. conda:recipe:: bioconductor-autonomics
   :replaces_section_title:
   :noindex:

   Generifying and intuifying cross\-platform omics analysis

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/autonomics.html
   :license: GPL-3
   :recipe: /`bioconductor-autonomics <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-autonomics>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-autonomics/meta.yaml>`_

   This package offers a generic and intuitive solution for cross\-platform omics data analysis. It has functions for import\, preprocessing\, exploration\, contrast analysis and visualization of omics data. It follows a tidy\, functional programming paradigm.


.. conda:package:: bioconductor-autonomics

   |downloads_bioconductor-autonomics| |docker_bioconductor-autonomics|

   :versions:
      
      

      ``1.10.2-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocfilecache: ``>=2.10.0,<2.11.0``
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-edger: ``>=4.0.0,<4.1.0``
   :depends bioconductor-limma: ``>=3.58.0,<3.59.0``
   :depends bioconductor-multiassayexperiment: ``>=1.28.0,<1.29.0``
   :depends bioconductor-pcamethods: ``>=1.94.0,<1.95.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends r-abind: 
   :depends r-assertive.base: 
   :depends r-assertive.files: 
   :depends r-assertive.numbers: 
   :depends r-assertive.sets: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-bit64: 
   :depends r-colorspace: 
   :depends r-data.table: 
   :depends r-dplyr: 
   :depends r-ggplot2: 
   :depends r-ggrepel: 
   :depends r-gridextra: 
   :depends r-magrittr: 
   :depends r-matrixstats: 
   :depends r-r.utils: 
   :depends r-rappdirs: 
   :depends r-readxl: 
   :depends r-rlang: 
   :depends r-scales: 
   :depends r-stringi: 
   :depends r-tidyr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-autonomics

   and update with::

      mamba update bioconductor-autonomics

  To create a new environment, run::

      mamba create --name myenvname bioconductor-autonomics

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-autonomics:<tag>

   (see `bioconductor-autonomics/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-autonomics| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-autonomics.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-autonomics
   :alt:   (downloads)
.. |docker_bioconductor-autonomics| image:: https://quay.io/repository/biocontainers/bioconductor-autonomics/status
   :target: https://quay.io/repository/biocontainers/bioconductor-autonomics
.. _`bioconductor-autonomics/tags`: https://quay.io/repository/biocontainers/bioconductor-autonomics?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-autonomics";
        var versions = ["1.10.2","1.8.0","1.6.0","1.2.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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