:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-baynorm' .. highlight: bash bioconductor-baynorm ==================== .. conda:recipe:: bioconductor-baynorm :replaces_section_title: :noindex: Single\-cell RNA sequencing data normalization :homepage: https://bioconductor.org/packages/3.18/bioc/html/bayNorm.html :license: GPL (>= 2) :recipe: /`bioconductor-baynorm `_/`meta.yaml `_ bayNorm is used for normalizing single\-cell RNA\-seq data. .. conda:package:: bioconductor-baynorm |downloads_bioconductor-baynorm| |docker_bioconductor-baynorm| :versions: .. raw:: html
1.20.0-01.18.1-01.16.0-11.16.0-01.12.0-21.12.0-11.12.0-01.10.0-01.8.0-1 ``1.20.0-0``,  ``1.18.1-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.12.0-2``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.0.6-0`` .. raw:: html
:depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0a0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0a0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-bb: :depends r-dosnow: :depends r-fitdistrplus: :depends r-foreach: :depends r-iterators: :depends r-locfit: :depends r-mass: :depends r-matrix: :depends r-rcpp: ``>=0.12.12`` :depends r-rcpparmadillo: :depends r-rcppprogress: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-baynorm and update with:: mamba update bioconductor-baynorm To create a new environment, run:: mamba create --name myenvname bioconductor-baynorm with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-baynorm: (see `bioconductor-baynorm/tags`_ for valid values for ````) .. |downloads_bioconductor-baynorm| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-baynorm.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-baynorm :alt: (downloads) .. |docker_bioconductor-baynorm| image:: https://quay.io/repository/biocontainers/bioconductor-baynorm/status :target: https://quay.io/repository/biocontainers/bioconductor-baynorm .. _`bioconductor-baynorm/tags`: https://quay.io/repository/biocontainers/bioconductor-baynorm?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-baynorm/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-baynorm/README.html