:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-beclear' .. highlight: bash bioconductor-beclear ==================== .. conda:recipe:: bioconductor-beclear :replaces_section_title: :noindex: Correction of batch effects in DNA methylation data :homepage: https://bioconductor.org/packages/3.18/bioc/html/BEclear.html :license: GPL-3 :recipe: /`bioconductor-beclear `_/`meta.yaml `_ :links: biotools: :biotools:`beclear`, doi: :doi:`10.1371/journal.pone.0159921` Provides functions to detect and correct for batch effects in DNA methylation data. The core function is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers. .. conda:package:: bioconductor-beclear |downloads_bioconductor-beclear| |docker_bioconductor-beclear| :versions: .. raw:: html
2.18.0-02.16.0-02.14.0-12.14.0-02.10.0-22.10.0-12.10.0-02.8.0-02.6.0-1 ``2.18.0-0``,  ``2.16.0-0``,  ``2.14.0-1``,  ``2.14.0-0``,  ``2.10.0-2``,  ``2.10.0-1``,  ``2.10.0-0``,  ``2.8.0-0``,  ``2.6.0-1``,  ``2.6.0-0``,  ``2.4.0-0``,  ``2.2.0-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.14.0-0``,  ``1.12.1-0``,  ``1.10.0-0``,  ``1.8.0-0`` .. raw:: html
:depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-abind: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: ``>=1.11.8`` :depends r-dixontest: :depends r-futile.logger: :depends r-ids: :depends r-matrix: :depends r-rcpp: :depends r-rdpack: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-beclear and update with:: mamba update bioconductor-beclear To create a new environment, run:: mamba create --name myenvname bioconductor-beclear with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-beclear: (see `bioconductor-beclear/tags`_ for valid values for ````) .. |downloads_bioconductor-beclear| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-beclear.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-beclear :alt: (downloads) .. |docker_bioconductor-beclear| image:: https://quay.io/repository/biocontainers/bioconductor-beclear/status :target: https://quay.io/repository/biocontainers/bioconductor-beclear .. _`bioconductor-beclear/tags`: https://quay.io/repository/biocontainers/bioconductor-beclear?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-beclear/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-beclear/README.html