:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bgeedb' .. highlight: bash bioconductor-bgeedb =================== .. conda:recipe:: bioconductor-bgeedb :replaces_section_title: :noindex: Annotation and gene expression data retrieval from Bgee database. TopAnat\, an anatomical entities Enrichment Analysis tool for UBERON ontology :homepage: https://bioconductor.org/packages/3.14/bioc/html/BgeeDB.html :license: GPL-3 + file LICENSE :recipe: /`bioconductor-bgeedb `_/`meta.yaml `_ :links: biotools: :biotools:`bgeedb`, doi: :doi:`10.12688/f1000research.9973.1` A package for the annotation and gene expression data download from Bgee database\, and TopAnat analysis\: GO\-like enrichment of anatomical terms\, mapped to genes by expression patterns. .. conda:package:: bioconductor-bgeedb |downloads_bioconductor-bgeedb| |docker_bioconductor-bgeedb| :versions: .. raw:: html
2.20.0-02.18.0-02.16.0-12.16.0-02.14.0-02.12.0-02.10.0-12.8.0-02.6.2-0 ``2.20.0-0``,  ``2.18.0-0``,  ``2.16.0-1``,  ``2.16.0-0``,  ``2.14.0-0``,  ``2.12.0-0``,  ``2.10.0-1``,  ``2.8.0-0``,  ``2.6.2-0``,  ``2.4.0-0``,  ``2.2.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-graph: ``>=1.72.0,<1.73.0`` :depends bioconductor-topgo: ``>=2.46.0,<2.47.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-curl: :depends r-data.table: :depends r-digest: :depends r-dplyr: :depends r-r.utils: :depends r-rcurl: :depends r-rsqlite: :depends r-tidyr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-bgeedb and update with:: conda update bioconductor-bgeedb or use the docker container:: docker pull quay.io/biocontainers/bioconductor-bgeedb: (see `bioconductor-bgeedb/tags`_ for valid values for ````) .. |downloads_bioconductor-bgeedb| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bgeedb.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bgeedb :alt: (downloads) .. |docker_bioconductor-bgeedb| image:: https://quay.io/repository/biocontainers/bioconductor-bgeedb/status :target: https://quay.io/repository/biocontainers/bioconductor-bgeedb .. _`bioconductor-bgeedb/tags`: https://quay.io/repository/biocontainers/bioconductor-bgeedb?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bgeedb/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bgeedb/README.html