:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-bgeedb'
.. highlight: bash

bioconductor-bgeedb
===================

.. conda:recipe:: bioconductor-bgeedb
   :replaces_section_title:
   :noindex:

   Annotation and gene expression data retrieval from Bgee database. TopAnat\, an anatomical entities Enrichment Analysis tool for UBERON ontology

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/BgeeDB.html
   :license: GPL-3 + file LICENSE
   :recipe: /`bioconductor-bgeedb <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bgeedb>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bgeedb/meta.yaml>`_
   :links: biotools: :biotools:`bgeedb`, doi: :doi:`10.12688/f1000research.9973.1`

   A package for the annotation and gene expression data download from Bgee database\, and TopAnat analysis\: GO\-like enrichment of anatomical terms\, mapped to genes by expression patterns.


.. conda:package:: bioconductor-bgeedb

   |downloads_bioconductor-bgeedb| |docker_bioconductor-bgeedb|

   :versions:
      
      

      ``2.14.0-0``,  ``2.12.0-0``,  ``2.10.0-1``,  ``2.8.0-0``,  ``2.6.2-0``,  ``2.4.0-0``,  ``2.2.0-0``

      

   
   :depends bioconductor-biobase: ``>=2.48.0,<2.49.0``
   :depends bioconductor-graph: ``>=1.66.0,<1.67.0``
   :depends bioconductor-topgo: ``>=2.40.0,<2.41.0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-data.table: 
   :depends r-digest: 
   :depends r-dplyr: 
   :depends r-rcurl: 
   :depends r-rsqlite: 
   :depends r-tidyr: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-bgeedb

   and update with::

      conda update bioconductor-bgeedb

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-bgeedb:<tag>

   (see `bioconductor-bgeedb/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-bgeedb| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bgeedb.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-bgeedb
   :alt:   (downloads)
.. |docker_bioconductor-bgeedb| image:: https://quay.io/repository/biocontainers/bioconductor-bgeedb/status
   :target: https://quay.io/repository/biocontainers/bioconductor-bgeedb
.. _`bioconductor-bgeedb/tags`: https://quay.io/repository/biocontainers/bioconductor-bgeedb?tab=tags







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