:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-biocthis' .. highlight: bash bioconductor-biocthis ===================== .. conda:recipe:: bioconductor-biocthis :replaces_section_title: :noindex: Automate package and project setup for Bioconductor packages :homepage: https://bioconductor.org/packages/3.18/bioc/html/biocthis.html :license: Artistic-2.0 :recipe: /`bioconductor-biocthis `_/`meta.yaml `_ This package expands the usethis package with the goal of helping automate the process of creating R packages for Bioconductor or making them Bioconductor\-friendly. .. conda:package:: bioconductor-biocthis |downloads_bioconductor-biocthis| |docker_bioconductor-biocthis| :versions: ``1.12.0-0``,  ``1.10.3-0``,  ``1.8.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.10-0``,  ``1.0.0-1`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biocmanager: :depends r-fs: :depends r-glue: :depends r-rlang: :depends r-styler: :depends r-usethis: ``>=2.0.1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-biocthis and update with:: mamba update bioconductor-biocthis To create a new environment, run:: mamba create --name myenvname bioconductor-biocthis with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-biocthis: (see `bioconductor-biocthis/tags`_ for valid values for ````) .. |downloads_bioconductor-biocthis| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-biocthis.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-biocthis :alt: (downloads) .. |docker_bioconductor-biocthis| image:: https://quay.io/repository/biocontainers/bioconductor-biocthis/status :target: https://quay.io/repository/biocontainers/bioconductor-biocthis .. _`bioconductor-biocthis/tags`: https://quay.io/repository/biocontainers/bioconductor-biocthis?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocthis/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-biocthis/README.html