:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-biodbuniprot' .. highlight: bash bioconductor-biodbuniprot ========================= .. conda:recipe:: bioconductor-biodbuniprot :replaces_section_title: :noindex: biodbUniprot\, a library for connecting to the Uniprot Database :homepage: https://bioconductor.org/packages/3.18/bioc/html/biodbUniprot.html :license: AGPL-3 :recipe: /`bioconductor-biodbuniprot `_/`meta.yaml `_ The biodbUniprot library is an extension of the biodb framework package. It provides access to the UniProt database. It allows to retrieve entries by their accession number\, and run web service queries for searching for entries. .. conda:package:: bioconductor-biodbuniprot |downloads_bioconductor-biodbuniprot| |docker_bioconductor-biodbuniprot| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-0`` :depends bioconductor-biodb: ``>=1.10.0,<1.11.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-r6: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-biodbuniprot and update with:: mamba update bioconductor-biodbuniprot To create a new environment, run:: mamba create --name myenvname bioconductor-biodbuniprot with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-biodbuniprot: (see `bioconductor-biodbuniprot/tags`_ for valid values for ````) .. |downloads_bioconductor-biodbuniprot| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-biodbuniprot.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-biodbuniprot :alt: (downloads) .. |docker_bioconductor-biodbuniprot| image:: https://quay.io/repository/biocontainers/bioconductor-biodbuniprot/status :target: https://quay.io/repository/biocontainers/bioconductor-biodbuniprot .. _`bioconductor-biodbuniprot/tags`: https://quay.io/repository/biocontainers/bioconductor-biodbuniprot?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biodbuniprot/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-biodbuniprot/README.html