:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-biomvrcns'
.. highlight: bash

bioconductor-biomvrcns
======================

.. conda:recipe:: bioconductor-biomvrcns
   :replaces_section_title:
   :noindex:

   Copy Number study and Segmentation for multivariate biological data

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/biomvRCNS.html
   :license: GPL (>= 2)
   :recipe: /`bioconductor-biomvrcns <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-biomvrcns>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-biomvrcns/meta.yaml>`_

   In this package\, a Hidden Semi Markov Model \(HSMM\) and one homogeneous segmentation model are designed and implemented for segmentation genomic data\, with the aim of assisting in transcripts detection using high throughput technology like RNA\-seq or tiling array\, and copy number analysis using aCGH or sequencing.


.. conda:package:: bioconductor-biomvrcns

   |downloads_bioconductor-biomvrcns| |docker_bioconductor-biomvrcns|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.42.1-0</code>,  <code>1.38.0-1</code>,  <code>1.38.0-0</code>,  <code>1.34.0-2</code>,  <code>1.34.0-1</code>,  <code>1.34.0-0</code>,  <code>1.32.0-0</code>,  <code>1.30.0-1</code>,  <code>1.30.0-0</code>,  </span></summary>
      

      ``1.42.1-0``,  ``1.38.0-1``,  ``1.38.0-0``,  ``1.34.0-2``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0``
   :depends bioconductor-genomicranges: ``>=1.54.1,<1.55.0a0``
   :depends bioconductor-gviz: ``>=1.46.0,<1.47.0``
   :depends bioconductor-gviz: ``>=1.46.1,<1.47.0a0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-mvtnorm: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-biomvrcns

   and update with::

      mamba update bioconductor-biomvrcns

  To create a new environment, run::

      mamba create --name myenvname bioconductor-biomvrcns

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-biomvrcns:<tag>

   (see `bioconductor-biomvrcns/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-biomvrcns| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-biomvrcns.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-biomvrcns
   :alt:   (downloads)
.. |docker_bioconductor-biomvrcns| image:: https://quay.io/repository/biocontainers/bioconductor-biomvrcns/status
   :target: https://quay.io/repository/biocontainers/bioconductor-biomvrcns
.. _`bioconductor-biomvrcns/tags`: https://quay.io/repository/biocontainers/bioconductor-biomvrcns?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-biomvrcns";
        var versions = ["1.42.1","1.38.0","1.38.0","1.34.0","1.34.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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