:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bloodcancermultiomics2017' .. highlight: bash bioconductor-bloodcancermultiomics2017 ====================================== .. conda:recipe:: bioconductor-bloodcancermultiomics2017 :replaces_section_title: :noindex: \"Drug\-perturbation\-based stratification of blood cancer\" by Dietrich S\, Oles M\, Lu J et al. \- experimental data and complete analysis :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/BloodCancerMultiOmics2017.html :license: LGPL (>= 3) :recipe: /`bioconductor-bloodcancermultiomics2017 `_/`meta.yaml `_ The package contains data of the Primary Blood Cancer Encyclopedia \(PACE\) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper \"Drug\-perturbation\-based stratification of blood cancer\" by Dietrich S\, Oles M\, Lu J et al.\, J. Clin. Invest. \(2018\) 128\(1\)\:427\-445. doi\:10.1172\/JCI93801. .. conda:package:: bioconductor-bloodcancermultiomics2017 |downloads_bioconductor-bloodcancermultiomics2017| |docker_bioconductor-bloodcancermultiomics2017| :versions: .. raw:: html
1.22.0-01.20.0-01.18.0-01.14.0-11.14.0-01.12.0-01.10.0-11.10.0-01.8.0-0 ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.2.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-deseq2: ``>=1.42.0,<1.43.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-beeswarm: :depends r-devtools: :depends r-dplyr: :depends r-ggdendro: :depends r-ggplot2: :depends r-glmnet: :depends r-gtable: :depends r-ipflasso: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-scales: :depends r-survival: :depends r-tibble: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-bloodcancermultiomics2017 and update with:: mamba update bioconductor-bloodcancermultiomics2017 To create a new environment, run:: mamba create --name myenvname bioconductor-bloodcancermultiomics2017 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-bloodcancermultiomics2017: (see `bioconductor-bloodcancermultiomics2017/tags`_ for valid values for ````) .. |downloads_bioconductor-bloodcancermultiomics2017| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bloodcancermultiomics2017.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bloodcancermultiomics2017 :alt: (downloads) .. |docker_bioconductor-bloodcancermultiomics2017| image:: https://quay.io/repository/biocontainers/bioconductor-bloodcancermultiomics2017/status :target: https://quay.io/repository/biocontainers/bioconductor-bloodcancermultiomics2017 .. _`bioconductor-bloodcancermultiomics2017/tags`: https://quay.io/repository/biocontainers/bioconductor-bloodcancermultiomics2017?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bloodcancermultiomics2017/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bloodcancermultiomics2017/README.html