:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-brgedata'
.. highlight: bash

bioconductor-brgedata
=====================

.. conda:recipe:: bioconductor-brgedata
   :replaces_section_title:
   :noindex:

   Exposures\, Gene Expression and Methylation data for ilustration purpouses

   :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/brgedata.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-brgedata <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-brgedata>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-brgedata/meta.yaml>`_

   This package contains several sets of omics data including Gene Expression \(ExpressionSet\)\, Methylation \(GenomicRatioSet\)\, Proteome and Exposome \(ExposomeSet\). This data is used in vignettes and exaples at MEAL\, MultiDataSet and omicRexposome.


.. conda:package:: bioconductor-brgedata

   |downloads_bioconductor-brgedata| |docker_bioconductor-brgedata|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.24.0-0</code>,  <code>1.22.0-0</code>,  <code>1.20.0-0</code>,  <code>1.16.0-1</code>,  <code>1.16.0-0</code>,  <code>1.14.0-0</code>,  <code>1.12.0-1</code>,  <code>1.12.0-0</code>,  <code>1.10.0-0</code>,  </span></summary>
      

      ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.4.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-data-packages: ``>=20231203``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-brgedata

   and update with::

      mamba update bioconductor-brgedata

  To create a new environment, run::

      mamba create --name myenvname bioconductor-brgedata

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-brgedata:<tag>

   (see `bioconductor-brgedata/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-brgedata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-brgedata.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-brgedata
   :alt:   (downloads)
.. |docker_bioconductor-brgedata| image:: https://quay.io/repository/biocontainers/bioconductor-brgedata/status
   :target: https://quay.io/repository/biocontainers/bioconductor-brgedata
.. _`bioconductor-brgedata/tags`: https://quay.io/repository/biocontainers/bioconductor-brgedata?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-brgedata";
        var versions = ["1.24.0","1.22.0","1.20.0","1.16.0","1.16.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-brgedata/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-brgedata/README.html