:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major' .. highlight: bash bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major ======================================================= .. conda:recipe:: bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major :replaces_section_title: :noindex: Full genome sequences for Homo sapiens \(UCSC version hg38\, based on GRCh38.p12\) with injected major alleles \(dbSNP151\) :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major.html :license: CC BY-NC-ND 4.0 :recipe: /`bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major `_/`meta.yaml `_ Full genome sequences for Homo sapiens \(Human\) as provided by UCSC \(hg38\, based on GRCh38.p12\) with major allele injected from dbSNP151\, and stored in Biostrings objects. Only single nucleotide variants \(SNVs\) were considered. At each SNV\, the most frequent allele was chosen at the major allele to be injected into the reference genome. .. conda:package:: bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major |downloads_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major| |docker_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major| :versions: ``0.0.9999-4``,  ``0.0.9999-3``,  ``0.0.9999-2``,  ``0.0.9999-1``,  ``0.0.9999-0`` :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major and update with:: mamba update bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major To create a new environment, run:: mamba create --name myenvname bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major: (see `bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/tags`_ for valid values for ````) .. |downloads_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major :alt: (downloads) .. |docker_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major| image:: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/status :target: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major .. _`bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/tags`: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/README.html