:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor'
.. highlight: bash

bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor
=======================================================

.. conda:recipe:: bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor
   :replaces_section_title:
   :noindex:

   Full genome sequences for Homo sapiens \(UCSC version hg38\, based on GRCh38.p12\) with injected minor alleles \(dbSNP151\)

   :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor.html
   :license: CC BY-NC-ND 4.0
   :recipe: /`bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/meta.yaml>`_

   Full genome sequences for Homo sapiens \(Human\) as provided by UCSC \(hg38\, based on GRCh38.p12\) with minor alleles injected from dbSNP151\, and stored in Biostrings objects. Full genome sequences for Homo sapiens \(Human\) as provided by UCSC \(hg38\, based on GRCh38.p12\) with minor alleles injected from dbSNP151\, and stored in Biostrings objects. Only common single nucleotide variants \(SNVs\) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele\, the most frequent allele was chosen as the minor allele to be injected into the reference genome.


.. conda:package:: bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

   |downloads_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor| |docker_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor|

   :versions:
      
      

      ``0.0.9999-4``,  ``0.0.9999-3``,  ``0.0.9999-2``,  ``0.0.9999-1``,  ``0.0.9999-0``

      

   
   :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0``
   :depends bioconductor-data-packages: ``>=20231203``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

   and update with::

      mamba update bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

  To create a new environment, run::

      mamba create --name myenvname bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor:<tag>

   (see `bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor
   :alt:   (downloads)
.. |docker_bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor| image:: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/status
   :target: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor
.. _`bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/tags`: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor";
        var versions = ["0.0.9999","0.0.9999","0.0.9999","0.0.9999","0.0.9999"];
    </script>






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