:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bsgenome.vvinifera.urgi.iggp12xv0' .. highlight: bash bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 ============================================== .. conda:recipe:: bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 :replaces_section_title: :noindex: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 \(IGGP version 12Xv0\) :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Vvinifera.URGI.IGGP12Xv0.html :license: CC0 :recipe: /`bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 `_/`meta.yaml `_ Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 \(derived from Pinot Noir and close to homozygosity after 6\-9 rounds of selfing\) as assembled by the IGGP \(version 12Xv0\) and available at the URGI \(INRA\) .. conda:package:: bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 |downloads_bioconductor-bsgenome.vvinifera.urgi.iggp12xv0| |docker_bioconductor-bsgenome.vvinifera.urgi.iggp12xv0| :versions: .. raw:: html
0.1-120.1-110.1-100.1-90.1-80.1-70.1-60.1-50.1-4 ``0.1-12``,  ``0.1-11``,  ``0.1-10``,  ``0.1-9``,  ``0.1-8``,  ``0.1-7``,  ``0.1-6``,  ``0.1-5``,  ``0.1-4``,  ``0.1-3``,  ``0.1-2``,  ``0.1-0`` .. raw:: html
:depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 and update with:: mamba update bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 To create a new environment, run:: mamba create --name myenvname bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0: (see `bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/tags`_ for valid values for ````) .. |downloads_bioconductor-bsgenome.vvinifera.urgi.iggp12xv0| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 :alt: (downloads) .. |docker_bioconductor-bsgenome.vvinifera.urgi.iggp12xv0| image:: https://quay.io/repository/biocontainers/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/status :target: https://quay.io/repository/biocontainers/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0 .. _`bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/tags`: https://quay.io/repository/biocontainers/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/README.html