:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bubbletree' .. highlight: bash bioconductor-bubbletree ======================= .. conda:recipe:: bioconductor-bubbletree :replaces_section_title: :noindex: BubbleTree\: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data :homepage: https://bioconductor.org/packages/3.14/bioc/html/BubbleTree.html :license: LGPL (>= 3) :recipe: /`bioconductor-bubbletree `_/`meta.yaml `_ :links: biotools: :biotools:`bubbletree`, doi: :doi:`10.1093/nar/gkv1102` CNV analysis in groups of tumor samples. .. conda:package:: bioconductor-bubbletree |downloads_bioconductor-bubbletree| |docker_bioconductor-bubbletree| :versions: .. raw:: html
2.24.0-02.22.0-02.20.0-12.20.0-02.18.0-02.16.0-02.14.0-12.12.0-02.10.0-0 ``2.24.0-0``,  ``2.22.0-0``,  ``2.20.0-1``,  ``2.20.0-0``,  ``2.18.0-0``,  ``2.16.0-0``,  ``2.14.0-1``,  ``2.12.0-0``,  ``2.10.0-0``,  ``2.8.0-1``,  ``2.8.0-0``,  ``2.6.0-0``,  ``2.4.0-0``,  ``2.1.5-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biocstyle: ``>=2.22.0,<2.23.0`` :depends bioconductor-biovizbase: ``>=1.42.0,<1.43.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dplyr: :depends r-e1071: :depends r-ggplot2: :depends r-gridextra: :depends r-gtable: :depends r-gtools: :depends r-magrittr: :depends r-plyr: :depends r-rcolorbrewer: :depends r-writexls: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-bubbletree and update with:: conda update bioconductor-bubbletree or use the docker container:: docker pull quay.io/biocontainers/bioconductor-bubbletree: (see `bioconductor-bubbletree/tags`_ for valid values for ````) .. |downloads_bioconductor-bubbletree| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bubbletree.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bubbletree :alt: (downloads) .. |docker_bioconductor-bubbletree| image:: https://quay.io/repository/biocontainers/bioconductor-bubbletree/status :target: https://quay.io/repository/biocontainers/bioconductor-bubbletree .. _`bioconductor-bubbletree/tags`: https://quay.io/repository/biocontainers/bioconductor-bubbletree?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bubbletree/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bubbletree/README.html