:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-bumpymatrix'
.. highlight: bash

bioconductor-bumpymatrix
========================

.. conda:recipe:: bioconductor-bumpymatrix
   :replaces_section_title:
   :noindex:

   Bumpy Matrix of Non\-Scalar Objects

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/BumpyMatrix.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-bumpymatrix <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bumpymatrix>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bumpymatrix/meta.yaml>`_

   Implements the BumpyMatrix class and several subclasses for holding non\-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension\, much like a bumpy surface \- hence the name. Of particular interest is the BumpyDataFrameMatrix\, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two\-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.


.. conda:package:: bioconductor-bumpymatrix

   |downloads_bioconductor-bumpymatrix| |docker_bioconductor-bumpymatrix|

   :versions:
      
      

      ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-matrix: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-bumpymatrix

   and update with::

      mamba update bioconductor-bumpymatrix

  To create a new environment, run::

      mamba create --name myenvname bioconductor-bumpymatrix

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-bumpymatrix:<tag>

   (see `bioconductor-bumpymatrix/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-bumpymatrix| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bumpymatrix.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-bumpymatrix
   :alt:   (downloads)
.. |docker_bioconductor-bumpymatrix| image:: https://quay.io/repository/biocontainers/bioconductor-bumpymatrix/status
   :target: https://quay.io/repository/biocontainers/bioconductor-bumpymatrix
.. _`bioconductor-bumpymatrix/tags`: https://quay.io/repository/biocontainers/bioconductor-bumpymatrix?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-bumpymatrix";
        var versions = ["1.10.0","1.8.0","1.6.0","1.2.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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