:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-cancersubtypes' .. highlight: bash bioconductor-cancersubtypes =========================== .. conda:recipe:: bioconductor-cancersubtypes :replaces_section_title: :noindex: Cancer subtypes identification\, validation and visualization based on multiple genomic data sets :homepage: https://bioconductor.org/packages/3.17/bioc/html/CancerSubtypes.html :license: GPL (>= 2) :recipe: /`bioconductor-cancersubtypes `_/`meta.yaml `_ :links: biotools: :biotools:`cancersubtypes`, doi: :doi:`10.1038/nmeth.3252` CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi\-omics data\, such as gene expression\, miRNA expression\, DNA methylation and others. .. conda:package:: bioconductor-cancersubtypes |downloads_bioconductor-cancersubtypes| |docker_bioconductor-cancersubtypes| :versions: .. raw:: html
1.26.0-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-01.10.0-1 ``1.26.0-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-consensusclusterplus: ``>=1.64.0,<1.65.0`` :depends bioconductor-impute: ``>=1.74.0,<1.75.0`` :depends bioconductor-limma: ``>=3.56.0,<3.57.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cluster: :depends r-nmf: :depends r-sigclust: :depends r-survival: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-cancersubtypes and update with:: mamba update bioconductor-cancersubtypes To create a new environment, run:: mamba create --name myenvname bioconductor-cancersubtypes with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-cancersubtypes: (see `bioconductor-cancersubtypes/tags`_ for valid values for ````) .. |downloads_bioconductor-cancersubtypes| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cancersubtypes.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-cancersubtypes :alt: (downloads) .. |docker_bioconductor-cancersubtypes| image:: https://quay.io/repository/biocontainers/bioconductor-cancersubtypes/status :target: https://quay.io/repository/biocontainers/bioconductor-cancersubtypes .. _`bioconductor-cancersubtypes/tags`: https://quay.io/repository/biocontainers/bioconductor-cancersubtypes?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cancersubtypes/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-cancersubtypes/README.html