:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-ccmap' .. highlight: bash bioconductor-ccmap ================== .. conda:recipe:: bioconductor-ccmap :replaces_section_title: :noindex: Combination Connectivity Mapping :homepage: https://bioconductor.org/packages/3.18/bioc/html/ccmap.html :license: MIT + file LICENSE :recipe: /`bioconductor-ccmap `_/`meta.yaml `_ Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles. .. conda:package:: bioconductor-ccmap |downloads_bioconductor-ccmap| |docker_bioconductor-ccmap| :versions: .. raw:: html
1.28.0-01.26.0-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-1 ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.0-1``,  ``1.8.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0`` :depends bioconductor-ccdata: ``>=1.28.0,<1.29.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biocmanager: ``>=1.30.4`` :depends r-data.table: ``>=1.10.4`` :depends r-doparallel: ``>=1.0.10`` :depends r-foreach: ``>=1.4.3`` :depends r-lsa: ``>=0.73.1`` :depends r-xgboost: ``>=0.6.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-ccmap and update with:: mamba update bioconductor-ccmap To create a new environment, run:: mamba create --name myenvname bioconductor-ccmap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-ccmap: (see `bioconductor-ccmap/tags`_ for valid values for ````) .. |downloads_bioconductor-ccmap| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ccmap.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-ccmap :alt: (downloads) .. |docker_bioconductor-ccmap| image:: https://quay.io/repository/biocontainers/bioconductor-ccmap/status :target: https://quay.io/repository/biocontainers/bioconductor-ccmap .. _`bioconductor-ccmap/tags`: https://quay.io/repository/biocontainers/bioconductor-ccmap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ccmap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-ccmap/README.html