:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-cellhts2'
.. highlight: bash

bioconductor-cellhts2
=====================

.. conda:recipe:: bioconductor-cellhts2
   :replaces_section_title:
   :noindex:

   Analysis of cell\-based screens \- revised version of cellHTS

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/cellHTS2.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-cellhts2 <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cellhts2>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cellhts2/meta.yaml>`_

   This package provides tools for the analysis of high\-throughput assays that were performed in microtitre plate formats \(including but not limited to 384\-well plates\). The functionality includes data import and management\, normalisation\, quality assessment\, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work\, we have applied the package to RNAi screens on fly and human cells\, and for screens of yeast libraries. See \?cellHTS2 for a brief introduction.


.. conda:package:: bioconductor-cellhts2

   |downloads_bioconductor-cellhts2| |docker_bioconductor-cellhts2|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.66.0-0</code>,  <code>2.64.0-0</code>,  <code>2.62.0-0</code>,  <code>2.58.0-0</code>,  <code>2.56.0-0</code>,  <code>2.52.0-0</code>,  <code>2.50.0-0</code>,  <code>2.48.0-1</code>,  <code>2.46.0-0</code>,  </span></summary>
      

      ``2.66.0-0``,  ``2.64.0-0``,  ``2.62.0-0``,  ``2.58.0-0``,  ``2.56.0-0``,  ``2.52.0-0``,  ``2.50.0-0``,  ``2.48.0-1``,  ``2.46.0-0``,  ``2.44.0-0``,  ``2.42.0-0``,  ``2.40.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-category: ``>=2.68.0,<2.69.0``
   :depends bioconductor-genefilter: ``>=1.84.0,<1.85.0``
   :depends bioconductor-gseabase: ``>=1.64.0,<1.65.0``
   :depends bioconductor-splots: ``>=1.68.0,<1.69.0``
   :depends bioconductor-vsn: ``>=3.70.0,<3.71.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-hwriter: 
   :depends r-locfit: 
   :depends r-rcolorbrewer: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-cellhts2

   and update with::

      mamba update bioconductor-cellhts2

  To create a new environment, run::

      mamba create --name myenvname bioconductor-cellhts2

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-cellhts2:<tag>

   (see `bioconductor-cellhts2/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-cellhts2| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cellhts2.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-cellhts2
   :alt:   (downloads)
.. |docker_bioconductor-cellhts2| image:: https://quay.io/repository/biocontainers/bioconductor-cellhts2/status
   :target: https://quay.io/repository/biocontainers/bioconductor-cellhts2
.. _`bioconductor-cellhts2/tags`: https://quay.io/repository/biocontainers/bioconductor-cellhts2?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-cellhts2";
        var versions = ["2.66.0","2.64.0","2.62.0","2.58.0","2.56.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cellhts2/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-cellhts2/README.html