:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-cellmixs' .. highlight: bash bioconductor-cellmixs ===================== .. conda:recipe:: bioconductor-cellmixs :replaces_section_title: :noindex: Evaluate Cellspecific Mixing :homepage: https://bioconductor.org/packages/3.18/bioc/html/CellMixS.html :license: GPL (>=2) :recipe: /`bioconductor-cellmixs `_/`meta.yaml `_ CellMixS provides metrics and functions to evaluate batch effects\, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels\, e.g. on cell\, celltype or dataset level. .. conda:package:: bioconductor-cellmixs |downloads_bioconductor-cellmixs| |docker_bioconductor-cellmixs| :versions: .. raw:: html
1.18.0-01.16.0-01.14.0-01.10.0-01.8.0-01.6.1-01.6.0-01.4.0-01.2.0-0 ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biocneighbors: ``>=1.20.0,<1.21.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-scater: ``>=1.30.0,<1.31.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cowplot: :depends r-dplyr: :depends r-ggplot2: :depends r-ggridges: :depends r-ksamples: :depends r-magrittr: :depends r-purrr: :depends r-tidyr: :depends r-viridis: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-cellmixs and update with:: mamba update bioconductor-cellmixs To create a new environment, run:: mamba create --name myenvname bioconductor-cellmixs with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-cellmixs: (see `bioconductor-cellmixs/tags`_ for valid values for ````) .. |downloads_bioconductor-cellmixs| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cellmixs.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-cellmixs :alt: (downloads) .. |docker_bioconductor-cellmixs| image:: https://quay.io/repository/biocontainers/bioconductor-cellmixs/status :target: https://quay.io/repository/biocontainers/bioconductor-cellmixs .. _`bioconductor-cellmixs/tags`: https://quay.io/repository/biocontainers/bioconductor-cellmixs?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cellmixs/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-cellmixs/README.html