:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-cellscore'
.. highlight: bash

bioconductor-cellscore
======================

.. conda:recipe:: bioconductor-cellscore
   :replaces_section_title:
   :noindex:

   Tool for Evaluation of Cell Identity from Transcription Profiles

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/CellScore.html
   :license: GPL-3
   :recipe: /`bioconductor-cellscore <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cellscore>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cellscore/meta.yaml>`_

   The CellScore package contains functions to evaluate the cell identity of a test sample\, given a cell transition defined with a starting \(donor\) cell type and a desired target cell type. The evaluation is based upon a scoring system\, which uses a set of standard samples of known cell types\, as the reference set. The functions have been carried out on a large set of microarray data from one platform \(Affymetrix Human Genome U133 Plus 2.0\). In principle\, the method could be applied to any expression dataset\, provided that there are a sufficient number of standard samples and that the data are normalized.


.. conda:package:: bioconductor-cellscore

   |downloads_bioconductor-cellscore| |docker_bioconductor-cellscore|

   :versions:
      
      

      ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.2.0-0``

      

   
   :depends bioconductor-biobase: ``>=2.48.0,<2.49.0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-gplots: ``>=3.0.1``
   :depends r-lsa: ``>=0.73.1``
   :depends r-rcolorbrewer: ``>=1.1-2``
   :depends r-squash: ``>=1.0.8``
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-cellscore

   and update with::

      conda update bioconductor-cellscore

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-cellscore:<tag>

   (see `bioconductor-cellscore/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-cellscore| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cellscore.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-cellscore
   :alt:   (downloads)
.. |docker_bioconductor-cellscore| image:: https://quay.io/repository/biocontainers/bioconductor-cellscore/status
   :target: https://quay.io/repository/biocontainers/bioconductor-cellscore
.. _`bioconductor-cellscore/tags`: https://quay.io/repository/biocontainers/bioconductor-cellscore?tab=tags







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