:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-chipqc' .. highlight: bash bioconductor-chipqc =================== .. conda:recipe:: bioconductor-chipqc :replaces_section_title: :noindex: Quality metrics for ChIPseq data :homepage: https://bioconductor.org/packages/3.18/bioc/html/ChIPQC.html :license: GPL (>= 3) :recipe: /`bioconductor-chipqc `_/`meta.yaml `_ :links: biotools: :biotools:`chipqc` Quality metrics for ChIPseq data. .. conda:package:: bioconductor-chipqc |downloads_bioconductor-chipqc| |docker_bioconductor-chipqc| :versions: .. raw:: html
1.38.0-01.36.0-01.34.0-01.30.0-01.28.0-01.26.0-11.26.0-01.24.0-01.22.0-0 ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.18.2-0``,  ``1.18.0-0``,  ``1.16.1-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.3-0``,  ``1.10.3-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-chipseq: ``>=1.52.0,<1.53.0`` :depends bioconductor-diffbind: ``>=3.12.0,<3.13.0`` :depends bioconductor-genomicalignments: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-txdb.celegans.ucsc.ce6.ensgene: ``>=3.2.0,<3.3.0`` :depends bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene: ``>=3.2.0,<3.3.0`` :depends bioconductor-txdb.hsapiens.ucsc.hg18.knowngene: ``>=3.2.0,<3.3.0`` :depends bioconductor-txdb.hsapiens.ucsc.hg19.knowngene: ``>=3.2.0,<3.3.0`` :depends bioconductor-txdb.mmusculus.ucsc.mm10.knowngene: ``>=3.10.0,<3.11.0`` :depends bioconductor-txdb.mmusculus.ucsc.mm9.knowngene: ``>=3.2.0,<3.3.0`` :depends bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene: ``>=3.2.0,<3.3.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-ggplot2: :depends r-gtools: :depends r-nozzle.r1: :depends r-reshape2: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-chipqc and update with:: mamba update bioconductor-chipqc To create a new environment, run:: mamba create --name myenvname bioconductor-chipqc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-chipqc: (see `bioconductor-chipqc/tags`_ for valid values for ````) .. |downloads_bioconductor-chipqc| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-chipqc.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-chipqc :alt: (downloads) .. |docker_bioconductor-chipqc| image:: https://quay.io/repository/biocontainers/bioconductor-chipqc/status :target: https://quay.io/repository/biocontainers/bioconductor-chipqc .. _`bioconductor-chipqc/tags`: https://quay.io/repository/biocontainers/bioconductor-chipqc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipqc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-chipqc/README.html