:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-chromhmmdata'
.. highlight: bash

bioconductor-chromhmmdata
=========================

.. conda:recipe:: bioconductor-chromhmmdata
   :replaces_section_title:
   :noindex:

   Chromosome Size\, Coordinates and Anchor Files

   :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/chromhmmData.html
   :license: GPL-3
   :recipe: /`bioconductor-chromhmmdata <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-chromhmmdata>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-chromhmmdata/meta.yaml>`_

   Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes\, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.


.. conda:package:: bioconductor-chromhmmdata

   |downloads_bioconductor-chromhmmdata| |docker_bioconductor-chromhmmdata|

   :versions:
      
      

      ``0.99.2-4``,  ``0.99.2-3``,  ``0.99.2-2``,  ``0.99.2-1``,  ``0.99.2-0``

      

   
   :depends bioconductor-data-packages: ``>=20231203``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-chromhmmdata

   and update with::

      mamba update bioconductor-chromhmmdata

  To create a new environment, run::

      mamba create --name myenvname bioconductor-chromhmmdata

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-chromhmmdata:<tag>

   (see `bioconductor-chromhmmdata/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-chromhmmdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-chromhmmdata.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-chromhmmdata
   :alt:   (downloads)
.. |docker_bioconductor-chromhmmdata| image:: https://quay.io/repository/biocontainers/bioconductor-chromhmmdata/status
   :target: https://quay.io/repository/biocontainers/bioconductor-chromhmmdata
.. _`bioconductor-chromhmmdata/tags`: https://quay.io/repository/biocontainers/bioconductor-chromhmmdata?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-chromhmmdata";
        var versions = ["0.99.2","0.99.2","0.99.2","0.99.2","0.99.2"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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