:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-circrnaprofiler'
.. highlight: bash

bioconductor-circrnaprofiler
============================

.. conda:recipe:: bioconductor-circrnaprofiler
   :replaces_section_title:
   :noindex:

   circRNAprofiler\: An R\-Based Computational Framework for the Downstream Analysis of Circular RNAs

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/circRNAprofiler.html
   :license: GPL-3
   :recipe: /`bioconductor-circrnaprofiler <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-circrnaprofiler>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-circrnaprofiler/meta.yaml>`_

   R\-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation\-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis\, evolutionary conservation\, biogenesis to functional analysis.


.. conda:package:: bioconductor-circrnaprofiler

   |downloads_bioconductor-circrnaprofiler| |docker_bioconductor-circrnaprofiler|

   :versions:
      
      

      ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.2-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0``
   :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0``
   :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0``
   :depends bioconductor-bsgenome.hsapiens.ucsc.hg19: ``>=1.4.0,<1.5.0``
   :depends bioconductor-deseq2: ``>=1.42.0,<1.43.0``
   :depends bioconductor-edger: ``>=4.0.0,<4.1.0``
   :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0``
   :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0``
   :depends bioconductor-gwascat: ``>=2.34.0,<2.35.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-rtracklayer: ``>=1.62.0,<1.63.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-universalmotif: ``>=1.20.0,<1.21.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-dplyr: 
   :depends r-ggplot2: 
   :depends r-magrittr: 
   :depends r-r.utils: 
   :depends r-readr: 
   :depends r-reshape2: 
   :depends r-rlang: 
   :depends r-seqinr: 
   :depends r-stringi: 
   :depends r-stringr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-circrnaprofiler

   and update with::

      mamba update bioconductor-circrnaprofiler

  To create a new environment, run::

      mamba create --name myenvname bioconductor-circrnaprofiler

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-circrnaprofiler:<tag>

   (see `bioconductor-circrnaprofiler/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-circrnaprofiler| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-circrnaprofiler.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-circrnaprofiler
   :alt:   (downloads)
.. |docker_bioconductor-circrnaprofiler| image:: https://quay.io/repository/biocontainers/bioconductor-circrnaprofiler/status
   :target: https://quay.io/repository/biocontainers/bioconductor-circrnaprofiler
.. _`bioconductor-circrnaprofiler/tags`: https://quay.io/repository/biocontainers/bioconductor-circrnaprofiler?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-circrnaprofiler";
        var versions = ["1.16.0","1.14.0","1.12.0","1.8.0","1.6.0"];
    </script>






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-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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