:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-cnvranger' .. highlight: bash bioconductor-cnvranger ====================== .. conda:recipe:: bioconductor-cnvranger :replaces_section_title: :noindex: Summarization and expression\/phenotype association of CNV ranges :homepage: https://bioconductor.org/packages/3.14/bioc/html/CNVRanger.html :license: Artistic-2.0 :recipe: /`bioconductor-cnvranger `_/`meta.yaml `_ The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population\, assessing overlap with functional genomic regions\, and association analysis with gene expression and quantitative phenotypes. .. conda:package:: bioconductor-cnvranger |downloads_bioconductor-cnvranger| |docker_bioconductor-cnvranger| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-gdsarray: ``>=1.14.0,<1.15.0`` :depends bioconductor-gdsfmt: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends bioconductor-raggedexperiment: ``>=1.18.0,<1.19.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-snprelate: ``>=1.28.0,<1.29.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-data.table: :depends r-lattice: :depends r-plyr: :depends r-qqman: :depends r-rappdirs: :depends r-reshape2: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-cnvranger and update with:: conda update bioconductor-cnvranger or use the docker container:: docker pull quay.io/biocontainers/bioconductor-cnvranger: (see `bioconductor-cnvranger/tags`_ for valid values for ````) .. |downloads_bioconductor-cnvranger| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cnvranger.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-cnvranger :alt: (downloads) .. |docker_bioconductor-cnvranger| image:: https://quay.io/repository/biocontainers/bioconductor-cnvranger/status :target: https://quay.io/repository/biocontainers/bioconductor-cnvranger .. _`bioconductor-cnvranger/tags`: https://quay.io/repository/biocontainers/bioconductor-cnvranger?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cnvranger/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-cnvranger/README.html