:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-coseq' .. highlight: bash bioconductor-coseq ================== .. conda:recipe:: bioconductor-coseq :replaces_section_title: :noindex: Co\-Expression Analysis of Sequencing Data :homepage: https://bioconductor.org/packages/3.14/bioc/html/coseq.html :license: GPL-3 :recipe: /`bioconductor-coseq `_/`meta.yaml `_ Co\-expression analysis for expression profiles arising from high\-throughput sequencing data. Feature \(e.g.\, gene\) profiles are clustered using adapted transformations and mixture models or a K\-means algorithm\, and model selection criteria \(to choose an appropriate number of clusters\) are provided. .. conda:package:: bioconductor-coseq |downloads_bioconductor-coseq| |docker_bioconductor-coseq| :versions: ``1.18.0-0``,  ``1.16.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.6.0-0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-deseq2: ``>=1.34.0,<1.35.0`` :depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-htsfilter: ``>=1.34.0,<1.35.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-capushe: :depends r-compositions: :depends r-corrplot: :depends r-e1071: :depends r-ggplot2: :depends r-htscluster: :depends r-mvtnorm: :depends r-rmixmod: :depends r-scales: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-coseq and update with:: conda update bioconductor-coseq or use the docker container:: docker pull quay.io/biocontainers/bioconductor-coseq: (see `bioconductor-coseq/tags`_ for valid values for ````) .. |downloads_bioconductor-coseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-coseq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-coseq :alt: (downloads) .. |docker_bioconductor-coseq| image:: https://quay.io/repository/biocontainers/bioconductor-coseq/status :target: https://quay.io/repository/biocontainers/bioconductor-coseq .. _`bioconductor-coseq/tags`: https://quay.io/repository/biocontainers/bioconductor-coseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-coseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-coseq/README.html