:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-crlmm'
.. highlight: bash

bioconductor-crlmm
==================

.. conda:recipe:: bioconductor-crlmm
   :replaces_section_title:
   :noindex:

   Genotype Calling \(CRLMM\) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/crlmm.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-crlmm <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-crlmm>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-crlmm/meta.yaml>`_
   :links: biotools: :biotools:`crlmm`

   Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays\, as well as a copy number tool specific to 5.0\, 6.0\, and Illumina platforms.


.. conda:package:: bioconductor-crlmm

   |downloads_bioconductor-crlmm| |docker_bioconductor-crlmm|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.60.0-0</code>,  <code>1.58.0-0</code>,  <code>1.56.0-1</code>,  <code>1.56.0-0</code>,  <code>1.52.0-2</code>,  <code>1.52.0-1</code>,  <code>1.52.0-0</code>,  <code>1.50.0-0</code>,  <code>1.48.0-1</code>,  </span></summary>
      

      ``1.60.0-0``,  ``1.58.0-0``,  ``1.56.0-1``,  ``1.56.0-0``,  ``1.52.0-2``,  ``1.52.0-1``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-1``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-1``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-affyio: ``>=1.72.0,<1.73.0``
   :depends bioconductor-affyio: ``>=1.72.0,<1.73.0a0``
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0``
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biocgenerics: ``>=0.48.1,<0.49.0a0``
   :depends bioconductor-illuminaio: ``>=0.44.0,<0.45.0``
   :depends bioconductor-illuminaio: ``>=0.44.0,<0.45.0a0``
   :depends bioconductor-limma: ``>=3.58.0,<3.59.0``
   :depends bioconductor-limma: ``>=3.58.1,<3.59.0a0``
   :depends bioconductor-oligoclasses: ``>=1.64.0,<1.65.0``
   :depends bioconductor-oligoclasses: ``>=1.64.0,<1.65.0a0``
   :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0``
   :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-beanplot: 
   :depends r-ellipse: 
   :depends r-ff: 
   :depends r-foreach: 
   :depends r-lattice: 
   :depends r-matrixstats: 
   :depends r-mvtnorm: 
   :depends r-rcppeigen: ``>=0.3.1.2.1``
   :depends r-vgam: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-crlmm

   and update with::

      mamba update bioconductor-crlmm

  To create a new environment, run::

      mamba create --name myenvname bioconductor-crlmm

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-crlmm:<tag>

   (see `bioconductor-crlmm/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-crlmm| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-crlmm.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-crlmm
   :alt:   (downloads)
.. |docker_bioconductor-crlmm| image:: https://quay.io/repository/biocontainers/bioconductor-crlmm/status
   :target: https://quay.io/repository/biocontainers/bioconductor-crlmm
.. _`bioconductor-crlmm/tags`: https://quay.io/repository/biocontainers/bioconductor-crlmm?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-crlmm";
        var versions = ["1.60.0","1.58.0","1.56.0","1.56.0","1.52.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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