:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-csdr'
.. highlight: bash

bioconductor-csdr
=================

.. conda:recipe:: bioconductor-csdr
   :replaces_section_title:
   :noindex:

   Differential gene co\-expression

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/csdR.html
   :license: GPL-3
   :recipe: /`bioconductor-csdr <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-csdr>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-csdr/meta.yaml>`_

   This package contains functionality to run differential gene co\-expression across two different conditions. The algorithm is inspired by Voigt et al. 2017 and finds Conserved\, Specific and Differentiated genes \(hence the name CSD\). This package include efficient and variance calculation by bootstrapping and Welford\'s algorithm.


.. conda:package:: bioconductor-csdr

   |downloads_bioconductor-csdr| |docker_bioconductor-csdr|

   :versions:
      
      

      ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.0.0-2``,  ``1.0.0-1``,  ``1.0.0-0``

      

   
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends libstdcxx-ng: ``>=12``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-glue: 
   :depends r-matrixstats: 
   :depends r-rcpp: 
   :depends r-rhpcblasctl: 
   :depends r-wgcna: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-csdr

   and update with::

      mamba update bioconductor-csdr

  To create a new environment, run::

      mamba create --name myenvname bioconductor-csdr

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-csdr:<tag>

   (see `bioconductor-csdr/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-csdr| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-csdr.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-csdr
   :alt:   (downloads)
.. |docker_bioconductor-csdr| image:: https://quay.io/repository/biocontainers/bioconductor-csdr/status
   :target: https://quay.io/repository/biocontainers/bioconductor-csdr
.. _`bioconductor-csdr/tags`: https://quay.io/repository/biocontainers/bioconductor-csdr?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-csdr";
        var versions = ["1.8.0","1.6.0","1.4.0","1.4.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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