:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-curatedtbdata' .. highlight: bash bioconductor-curatedtbdata ========================== .. conda:recipe:: bioconductor-curatedtbdata :replaces_section_title: :noindex: Curation of existing 49 tuberculosis transcriptomic studies :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/curatedTBData.html :license: MIT + file LICENSE :recipe: /`bioconductor-curatedtbdata `_/`meta.yaml `_ The curatedTBData is an R package that provides standardized\, curated tuberculosis\(TB\) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets. .. conda:package:: bioconductor-curatedtbdata |downloads_bioconductor-curatedtbdata| |docker_bioconductor-curatedtbdata| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-1``,  ``1.0.0-0`` :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-multiassayexperiment: ``>=1.28.0,<1.29.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-rlang: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-curatedtbdata and update with:: mamba update bioconductor-curatedtbdata To create a new environment, run:: mamba create --name myenvname bioconductor-curatedtbdata with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-curatedtbdata: (see `bioconductor-curatedtbdata/tags`_ for valid values for ````) .. |downloads_bioconductor-curatedtbdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-curatedtbdata.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-curatedtbdata :alt: (downloads) .. |docker_bioconductor-curatedtbdata| image:: https://quay.io/repository/biocontainers/bioconductor-curatedtbdata/status :target: https://quay.io/repository/biocontainers/bioconductor-curatedtbdata .. _`bioconductor-curatedtbdata/tags`: https://quay.io/repository/biocontainers/bioconductor-curatedtbdata?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-curatedtbdata/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-curatedtbdata/README.html