:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-cytoml' .. highlight: bash bioconductor-cytoml =================== .. conda:recipe:: bioconductor-cytoml :replaces_section_title: :noindex: A GatingML Interface for Cross Platform Cytometry Data Sharing :homepage: https://bioconductor.org/packages/3.18/bioc/html/CytoML.html :license: AGPL-3.0-only :recipe: /`bioconductor-cytoml `_/`meta.yaml `_ Uses platform\-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms. .. conda:package:: bioconductor-cytoml |downloads_bioconductor-cytoml| |docker_bioconductor-cytoml| :versions: .. raw:: html
2.14.0-02.12.0-02.10.0-02.6.0-22.6.0-12.6.0-02.4.0-02.2.2-02.2.1-0 ``2.14.0-0``,  ``2.12.0-0``,  ``2.10.0-0``,  ``2.6.0-2``,  ``2.6.0-1``,  ``2.6.0-0``,  ``2.4.0-0``,  ``2.2.2-0``,  ``2.2.1-0``,  ``2.2.0-0``,  ``2.0.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.1-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-cytolib: ``>=2.14.0,<2.15.0`` :depends bioconductor-cytolib: ``>=2.14.0,<2.15.0a0`` :depends bioconductor-flowcore: ``>=2.14.0,<2.15.0`` :depends bioconductor-flowcore: ``>=2.14.0,<2.15.0a0`` :depends bioconductor-flowworkspace: ``>=4.14.0,<4.15.0`` :depends bioconductor-flowworkspace: ``>=4.14.0,<4.15.0a0`` :depends bioconductor-ggcyto: ``>=1.30.0,<1.31.0`` :depends bioconductor-ggcyto: ``>=1.30.0,<1.31.0a0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0a0`` :depends bioconductor-opencyto: ``>=2.14.0,<2.15.0`` :depends bioconductor-opencyto: ``>=2.14.0,<2.15.0a0`` :depends bioconductor-rbgl: ``>=1.78.0,<1.79.0`` :depends bioconductor-rbgl: ``>=1.78.0,<1.79.0a0`` :depends bioconductor-rgraphviz: ``>=2.46.0,<2.47.0`` :depends bioconductor-rgraphviz: ``>=2.46.0,<2.47.0a0`` :depends bioconductor-rhdf5lib: ``>=1.24.0,<1.25.0`` :depends bioconductor-rhdf5lib: ``>=1.24.0,<1.25.0a0`` :depends bioconductor-rprotobuflib: ``>=2.14.0,<2.15.0`` :depends bioconductor-rprotobuflib: ``>=2.14.0,<2.15.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends libxml2: ``>=2.11.6,<2.12.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-bh: ``>=1.62.0-1`` :depends r-cpp11: :depends r-data.table: :depends r-dplyr: :depends r-jsonlite: :depends r-tibble: :depends r-xml: :depends r-yaml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-cytoml and update with:: mamba update bioconductor-cytoml To create a new environment, run:: mamba create --name myenvname bioconductor-cytoml with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-cytoml: (see `bioconductor-cytoml/tags`_ for valid values for ````) .. |downloads_bioconductor-cytoml| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cytoml.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-cytoml :alt: (downloads) .. |docker_bioconductor-cytoml| image:: https://quay.io/repository/biocontainers/bioconductor-cytoml/status :target: https://quay.io/repository/biocontainers/bioconductor-cytoml .. _`bioconductor-cytoml/tags`: https://quay.io/repository/biocontainers/bioconductor-cytoml?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cytoml/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-cytoml/README.html