:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-diffcoexp' .. highlight: bash bioconductor-diffcoexp ====================== .. conda:recipe:: bioconductor-diffcoexp :replaces_section_title: :noindex: Differential Co\-expression Analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/diffcoexp.html :license: GPL (>2) :recipe: /`bioconductor-diffcoexp `_/`meta.yaml `_ A tool for the identification of differentially coexpressed links \(DCLs\) and differentially coexpressed genes \(DCGs\). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance. .. conda:package:: bioconductor-diffcoexp |downloads_bioconductor-diffcoexp| |docker_bioconductor-diffcoexp| :versions: .. raw:: html
1.22.0-01.20.0-01.18.0-01.14.0-01.12.0-01.10.0-11.10.0-01.8.0-01.6.0-0 ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.2.0-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-diffcorr: :depends r-igraph: :depends r-psych: :depends r-wgcna: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-diffcoexp and update with:: mamba update bioconductor-diffcoexp To create a new environment, run:: mamba create --name myenvname bioconductor-diffcoexp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-diffcoexp: (see `bioconductor-diffcoexp/tags`_ for valid values for ````) .. |downloads_bioconductor-diffcoexp| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-diffcoexp.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-diffcoexp :alt: (downloads) .. |docker_bioconductor-diffcoexp| image:: https://quay.io/repository/biocontainers/bioconductor-diffcoexp/status :target: https://quay.io/repository/biocontainers/bioconductor-diffcoexp .. _`bioconductor-diffcoexp/tags`: https://quay.io/repository/biocontainers/bioconductor-diffcoexp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-diffcoexp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-diffcoexp/README.html