:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-ebseq' .. highlight: bash bioconductor-ebseq ================== .. conda:recipe:: bioconductor-ebseq :replaces_section_title: :noindex: An R package for gene and isoform differential expression analysis of RNA\-seq data :homepage: https://bioconductor.org/packages/3.18/bioc/html/EBSeq.html :license: Artistic-2.0 :recipe: /`bioconductor-ebseq `_/`meta.yaml `_ :links: biotools: :biotools:`ebseq`, doi: :doi:`10.1093/bioinformatics/btt087` Differential Expression analysis at both gene and isoform level using RNA\-seq data .. conda:package:: bioconductor-ebseq |downloads_bioconductor-ebseq| |docker_bioconductor-ebseq| :versions: .. raw:: html
2.0.0-12.0.0-01.40.0-01.38.0-01.34.0-01.32.0-01.30.0-11.30.0-01.28.0-0 ``2.0.0-1``,  ``2.0.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.22.1-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0`` .. raw:: html
:depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-bh: :depends r-blockmodeling: :depends r-gplots: :depends r-rcpp: ``>=0.12.11`` :depends r-rcppeigen: ``>=0.3.2.9.0`` :depends r-testthat: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-ebseq and update with:: mamba update bioconductor-ebseq To create a new environment, run:: mamba create --name myenvname bioconductor-ebseq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-ebseq: (see `bioconductor-ebseq/tags`_ for valid values for ````) .. |downloads_bioconductor-ebseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ebseq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-ebseq :alt: (downloads) .. |docker_bioconductor-ebseq| image:: https://quay.io/repository/biocontainers/bioconductor-ebseq/status :target: https://quay.io/repository/biocontainers/bioconductor-ebseq .. _`bioconductor-ebseq/tags`: https://quay.io/repository/biocontainers/bioconductor-ebseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ebseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-ebseq/README.html