:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-eir' .. highlight: bash bioconductor-eir ================ .. conda:recipe:: bioconductor-eir :replaces_section_title: :noindex: Accelerated similarity searching of small molecules :homepage: https://bioconductor.org/packages/3.18/bioc/html/eiR.html :license: Artistic-2.0 :recipe: /`bioconductor-eir `_/`meta.yaml `_ The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach. .. conda:package:: bioconductor-eir |downloads_bioconductor-eir| |docker_bioconductor-eir| :versions: .. raw:: html
1.42.0-01.40.0-01.38.0-11.38.0-01.34.0-21.34.0-11.34.0-01.32.0-01.28.0-0 ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-1``,  ``1.38.0-0``,  ``1.34.0-2``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.0-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biocgenerics: ``>=0.48.1,<0.49.0a0`` :depends bioconductor-chemminer: ``>=3.54.0,<3.55.0`` :depends bioconductor-chemminer: ``>=3.54.0,<3.55.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dbi: :depends r-digest: :depends r-rcppannoy: ``>=0.0.9`` :depends r-rcurl: :depends r-runit: :depends r-snow: :depends r-snowfall: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-eir and update with:: mamba update bioconductor-eir To create a new environment, run:: mamba create --name myenvname bioconductor-eir with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-eir: (see `bioconductor-eir/tags`_ for valid values for ````) .. |downloads_bioconductor-eir| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-eir.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-eir :alt: (downloads) .. |docker_bioconductor-eir| image:: https://quay.io/repository/biocontainers/bioconductor-eir/status :target: https://quay.io/repository/biocontainers/bioconductor-eir .. _`bioconductor-eir/tags`: https://quay.io/repository/biocontainers/bioconductor-eir?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-eir/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-eir/README.html